University of california at san francisco



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9/16/17 Andrej Sali



UNIVERSITY OF CALIFORNIA AT SAN FRANCISCO
Curriculum vitæ
Name: Andrej Sali
Position: Professor, Step IX

Department of Bioengineering and Therapeutic Sciences (BTS)

Department of Pharmaceutical Chemistry

California Institute for Quantitative Biosciences (QB3)

School of Pharmacy
Integrative Program in Quantitative Biology (iPQB):

Bioinformatics and Medical Informatics Graduate Program

Biophysics Graduate Program

Graduate Program in Complex Biological Systems

Chemistry and Chemical Biology Graduate Program

Pharmaceutical Sciences and Pharmacogenomics Graduate Program


Address: Byers Hall, Suite 503B, MC 2552 University of California at San Francisco 1700 4th Street
San Francisco, CA 94158-2330 Voice: +1-415-514 4227
Fax: +1-415-514 4231 Email: sali@salilab.org Web: http://salilab.org


EDUCATION:







1983-1987 University of Ljubljana, Slovenia

BSc

Chemistry

1987-1991 University of London, UK

PhD

Molecular Biophysics

PRINCIPAL POSITIONS HELD:







1987-1991

Birkbeck College, and Imperial Cancer

PhD student

Crystallography




Research Fund, London, UK










(Mentor: Prof. Thomas L. Blundell, FRS).







1991-1994

Harvard University, Cambridge, USA

Postdoctoral Fellow

Chemistry




(Mentor: Prof. Martin Karplus).







1995-2000

The Rockefeller University

Assistant Professor




2000-2003

The Rockefeller University

Associate Professor




2003-now

University of California, San Francisco

Professor

BTS













OTHER POSITIONS HELD CONCURRENTLY:




2009-now

Director, California Institute for Quantitative Biosciences (QB3) at UCSF




2003-now

Vice Chair, Department of Bioengineering and Therapeutic Sciences




2003-now

Faculty member, California Institute for Quantitative Biosciences (QB3)




2003-now

Faculty member, Pharmaceutical Sciences and Pharmacogenomics Graduate Program




2003-now

Faculty member, Biophysics Graduate Program




2003-now

Faculty member, Bioinformatics and Medical Informatics Graduate Program




2003-now

Faculty member, Chemistry and Chemical Biology Graduate Program




HONORS AND AWARDS:




1984-1987

Undergraduate scholarship from J. Stefan Institute, Ljubljana, Slovenia.




1985

British Council Visiting Student at Birkbeck College, London, UK.




1987

British Council Visiting Student at Birkbeck College, London, UK.




1987-1990

Overseas Research Students Award from the Committee of Principals and Vice







Chancellors, England.




1987-1988

Scholarship for graduate studies from the Research Council of Slovenia.




1989-1990

Merck Sharp & Dohm academic scholarship.




1991-1994

Jane Coffin Childs Memorial Fund for Medical Research Postdoctoral Fellow.




1996-1999

Alexandrine and Alexander L. Sinsheimer Scholar.




1998-2000

Alfred P. Sloan Research Fellow.




2000-2003

Irma T. Hirschl Career Award Scientist.




2007

Zois Award, Science Ambassador of Republic of Slovenia.






KEYWORDS/AREAS OF INTEREST:
Structural biology, computational biology, bioinformatics, proteins, macromolecular complexes, assemblies, macromolecular processes, sequence, structure, function, evolution, modeling of protein structure, prediction of protein function.
We employ the laws of physics and the rules of evolution to develop and apply methods for:


  • predicting the structures of proteins;

  • determining the structures of macromolecular assemblies;

  • annotating the functions of proteins and their assemblies using their structures.



PROFESSIONAL ACTIVITIES:
PROFESSIONAL ORGANIZATIONS:



Memberships











1991-now

Protein Society




1991-now

American Association for the Advancement of Science




2007-now

Biophysical Society







Service to Professional Organizations



















2005-2008

Protein Society

Executive Committee




2005-now

Protein Data Bank

Scientific Advisory Committee




2009-now

PROSPECTS

(Proteomics Specification in Time and Space) consortium



Scientific Advisory Committee




2010

Keystone Symposia

Scientific Advisory Board (ad hoc)




2011-2014

Keystone Symposia

Scientific Advisory Board




2010-now

Protein Data Bank

Electron Microscopy Validation Task Force (Co-Chair)




2010-now

Protein Data Bank

Small Angle Scattering Task Force




2010-now

Electron Microscopy Data Bank

Scientific Advisory Committee




2009-now

PSI Knowledgebase

Working Group on Theoretical Structural Model Validation






SERVICE TO PROFESSIONAL PUBLICATIONS:


2003-now

Editor, Structure.

2004-now

Editorial Board, PLoS Computational Biology.

2002-now

Editorial Board, Journal of Computer Aided Molecular Design.

2002-now

Editorial Board, Molecular and Cellular Proteomics.

2004-now

Editorial Board, Protein Engineering, Design, and Selection.

2001-now

Section Head for the Structural Genomics section on BioMed Central

1990-now

Reviewer for Nature, Science Cell, Proc. Natl. Acad. Sci. USA, Nature Structural and




Molecular Biology Nature Genetics, Nature Biotechnology, Structure, Journal of




Molecular Biology, Proteins, Protein Engineering, Design, and Selection, Protein Science,




Bioinformatics, Nucleic Acids Research, Journal of Biological Chemistry, BMC Structural




Biology, Genome Biology, FEBS Letters, Journal of Computer Aided Molecular Design,




Biophysical Journal, Biochemical Journal, PLoS Biology, and PLoS Computational




Biology.

ORGANIZATION OF MEETINGS:

1999-2001

Program Committee, Georgia Tech Intl. Conference on Bioinformatics, Atlanta GA

2001

Program Committee, Math/Chem/Comp 2001, Dubrovnik, Croatia

2005

Program Committee, Protein Society 19th Symposium in Boston, MA

2005

Program Committee, Protein Structure Modeling Workshop, Rutgers University,NJ

2006

Program Committee, American Society for Biochemistry and Molecular Biology

2006-now Organizer, World Molecular Engineering Network, annual TSRI & UCSF meeting




in San Jose del Cabo, Mexico

2007

Program Committee, 4th Conference on Modeling of Protein Interactions (MPI)

2008

Organizer, Workshop on Applications of Protein Structure Models in Biomedical Research,




UCSF, CA

2010

Program Committee, 3DSIG symposium at ISMB conference, Boston

2010

Co-Organizer, Keystone Symposia on Frontiers in Structural Biology

2012

Co-Organizer, Keystone Symposia on High-Throughput Structural Biology

2012

Co-Organizer, Conference on Structural Analysis of Supramolecular Assemblies by Hybrid Methods, Lake Tahoe

2013

Organizer, Keystone Symposia on Structural Analysis of Supramolecular Assemblies by Hybrid Methods, Lake Tahoe



INVITED PRESENTATIONS (since 1999):
INTERNATIONAL


  1. CERCA CADD Symposium, Montreal, Canada. April 13, 1999.

  2. Data Mining in Crystallography, Erice, Italy. May 15, 1999.

  3. Structural Biology Net, Tallberg, Sweden. June, 1999.

  4. Frontiers in Structural Biology, Indian Institute of Science, Bangalore, India. August 27, 1999.

  5. BRI, Montreal, Canada. November 24, 1999.

  6. University of Toronto, Toronto, Canada. December 9, 1999.

  7. Japan Biophysical Society Meeting, Tokyo, Japan. January 17, 2000.

  8. Bioinformatics 2000, Elsinore, Denmark. April 28, 2000.

  9. University of Zuerich, Zuerich, Switzerland. December 5, 2001.

  10. Bioinformatics & Proteomics: From Sequence to Function, Lausanne, Switzerland. December 6, 2001.

  11. Structural Genomics and Bioinformatics, Instituto Juan March, Madrid, Spain. March 12-14, 2001.

  12. Annual meeting of the Canadian Society for Biochemistry and Molecular and Cellular Biology (CSBMCB), Toronto, Canada. May 31-June 3, 2001.

  13. Math/Chem/Comp 2001, Dubrovnik, Croatia. June 25-30, 2001.

  14. 4th International Conference on Biological Physics, ICBP2001, Kyoto, Japan. July 30-August 3, 2001.

  15. 4th International Conference on Molecular Structural Biology, ICMSB2001, Vienna, Austria. September 5-9, 2001.

  16. Genomics & Proteomics meeting, Barcelona, Spain. October 19, 2001.

  17. University of Barcelona, Barcelona, Spain. May 21, 2002.

  18. Genomics & Proteomics meeting, Barcelona, Spain. May 22, 2002.

  19. Samuel Lunenfeld Research Institute, Toronto, Canada. May 29, 2002.

  20. The 19th Congress and General Assembly of the International Union of Crystallography IUCR, Geneva, Switzerland. August 6-15, 2002.

  21. Genomics and Bioinformatics Center Inaugural Symposium, Pontificia Universidad Catolica, Santiago, Chile. November 18-20, 2002.

  22. Fourteenth Annual World Molecular Engineering Network (WMEN) Conference, San Jose del Cabo, Baja California Sur, Mexico. May 4-8, 2003.

  23. 5th Meeting of the Slovenian Biochemical Society, Ljubljana, Slovenia. September 24-28, 2003.

  24. University of Cologne, Cologne, Germany. January 19, 2004.

  25. Ringberg meeting, Schloss Ringberg, Germany. January 21-23, 2004.

  26. Fourteenth Annual World Molecular Engineering Network (WMEN) Conference (2004), San Jose del Cabo, Baja California Sur, Mexico. May 2-6, 2004.

  27. EMBO conference on Structures in Biology, EMBL, Heidelberg, Germany. November 10-13, 2004.

  28. The 7th World Congress of the World Association of Theoretically Oriented Chemists (WATOC), Capetown, South Africa. January 16-21, 2005.

  29. Keynote Speaker in XX IUCr Congress in Firenze, Italy. August 23-31, 2005.

  30. Speaker at the International Workshop M2CELL, The Royal Abbey of Fontevraud, Paris, France. December 4-6, 2005.

  31. Organizer and Speaker at the World Molecular Engineering Network Conference. Cabo San Lucas, Mexico. April 30-May 2nd, 2006.

  32. Plenary Speaker at the 11th Symposium on Recent Advances in Biophysics, National Taiwan University, Taipei, Taiwan. May 23-26, 2006

  33. 2006 Keystone Symposium on Multi-Protein Complexes Involved in Cell Regulation, St. John's College, Cambridge, UK. August 18-23, 2006.

  34. Organizer and Speaker at the World Molecular Engineering Network Conference. Cabo San Lucas, Mexico. April 29-May 2nd, 2007.

  35. Protein Complexes and Protein Networks Symposium in Martinsried, Germany, May 21-22, 2007.

  36. Symposium on Structural Biology and its Application to Drug Development at the University of Tokyo, Tokyo, Japan, 28 January 2007.

  37. Invited Speaker at the Basel Computational Biology Conference [BC]2 , Basel, Switzerland, March 13-14, 2008.

  38. Organizer and Speaker of the World Molecular Engineering Network Conferenc. Cabo San Lucas, Mexico. May 4-8, 2008.

  39. University of Toronto, Canada, 26 July, 2008.

  40. Speaker at the 40th Course: From Molecules to Medicines Integrating Crystallography in Drug Discovery, Erice, Italy. May 29 - June 8, 2008.

  41. Speaker at the Gordon Research Conference on Macromolecular Organization & Cell Function: Systems Cell Biology, Oxford, England, July 27 to August 2, 2008.

  42. Speaker at the 6th National NCCR Symposium on New Trends in Structural Biology, Zurich, Switzerland, September 8-9 2008.

  43. Speaker at the Max Planck Institute, Student Workshop, Goettingen, Germany. September 10-13 2008.

  44. Speaker at the Max Planck Institute of Biochemistry, INSTRUCT Open Meeting, in Martinsried, Germany, October 16-17 2008.

  45. Speaker at the NoE 3DEM final Meeting, Brdo, Slovenia, February 9-13, 2009.

  46. McDowell Lecture at the University of British Columbia, Vancouver, BC, Canada, March 10, 2009.

  47. Seminar at the University of Ljubljana, Ljubljana, Slovenia, December 17, 2009.

  48. Organizer and Speaker at the 20th World Molecular Engineering Network Conference, Cabo San Lucas, Mexico, May 2-5, 2010.

  49. Speaker at the Institute of Structural Molecular Biology, Birkbeck Institute, London, England, June 17-18, 2010

  50. Speaker at the MPIMP Dahlem Colloquia in Molecular Genetics, Max Planck Institute, Berlin, Germany, August 22-24, 2010.

  51. Speaker at Exeter College, Oxford University, England, October 4, 2010.

  52. Speaker at the PROteomics SPECification in Time and Space – PROSPECTS Meeting, Taormina, Sicily, Italy, November 2-4, 2010.

  53. Speaker at the 6th International Conference on Structural Biology and Functional Genomics, National University of Singapore, Singapore, December 6-8, 2010.

  54. Organizer and Speaker at the 21st World Molecular Engineering Network Conference, Cabo San Lucas, Mexico, May 1-4, 2011.

  55. Speaker at the International Conference on Structural Genomics, University of Toronto, Toronto, Ontario, Canada, May 10-14, 2011.

  56. Speaker at IGBMC, Strasbourg, France, July 17-18, 2011.

  57. Speaker at Max Planck Institute, Munich, Germany, July 20-21, 2011.

  58. Plenary Speaker at the ComBio 2011, Cairns Convention Centre, Cairns, Australia, September 26-29, 2011.

  59. Plenary Speaker at the Molecular Modeling Meeting, Queenstown, New Zealand, August 30-September 1, 2012.

NATIONAL, REGIONAL AND OTHER INVITED PRESENTATIONS




  1. Second International Georgia Tech Conference in Bioinformatics, Atlanta, Georgia, USA. November 12, 1999.

  2. 2.Structural Genomics Targets Workshop, NIH, Washington DC, USA. February 11, 1999.

  3. Advances & Opportunities at the Biology/Math/Computational/Physical Sciences Interface, Rutgers University, New Brunswick, NJ, USA. March 6, 1999.

  4. Mount Sinai School of Medicine, New York, NY, USA. March 19, 1999.

  5. New York Structural Biology Group, New York Academy of Sciences, New York, NY, USA. March 24, 1999.

  6. Columbia University, New York, NY, USA, 1999.

  7. Chemistry Dept., New York University, New York, NY, USA, 1999.

  8. Protein Sequence Structure Function Meeting, UCSF, San Francisco, CA, USA. April 23, 1999.

  9. The Scripps Institute, La Jolla, CA, USA. August 13, 1999.

  10. Mathematical Problems in the Molecular Sciences, Courant Institute, New York, NY, USA. October 10, 1999.

  11. City College of New York, New York, USA. October 20, 1999.

  12. Agouron Pharmaceuticals, San Diego, California, USA. October 28, 1999.

  13. Structural Genomics Conference, ANL, Chicago, Illinois, USA. November 16, 1999.

  14. Structural Genomics and the Pharmaceutical Industry, Princeton, New Jersey, USA. November 18, 1999.

  15. Quantitative Challenges in the Post Genomic Sequence Era, La Jolla Interfaces in Science, San Diego, California, USA. January 12, 2000.

  16. UCSD, Dept of Physics, San Diego, California, USA. January 19, 2000

  17. UCSF, San Francisco, California, USA. January 20, 2000.

  18. Center for Physics and Biology, Rockefeller University,New York, New York, USA. January 24, 2000.

  19. Biological Chemistry Seminar Series, University of Penn, Philadelphia, Pennsylvania, USA. February 17, 2000.

  20. ABRF 2000 ``From Singular to Global Analyses of Biological Systems’’, Bellevue, Washington, USA. February 22, 2000.

  21. AAAS conference, Washington DC, USA. March 20, 2000.

  22. Keystone Symposium on Macromolecular Assemblies at Work: Application of Physics, Chemistry, and Mathematics to Biology, Durango, Colorado, USA. March 25, 2000.

  23. Bio2000, Boston, Massachusetts, USA. March 28, 2000

  24. Computational Challenges of the Post Genomic Age, SUN, San Francisco, California, USA. May 12, 2000.

  25. Biopolymers Gordon Conference, Newport, Rhode Island, USA. June 18-22, 2000.

  26. 2000 FASEB Summer Research Conference on Protein Folding in the Cell, Saxton River, Vermont, USA. July 22-27, 2000.

  27. Monsanto/Pharmacia lectureship series, Univ. of Saint Louis, Missouri, USA. September 28, 2000.

  28. Workshop on Structural Genomics. NIGMS, Washington DC, USA. October 23, 2000.

  29. Genomics and Bioinformatics, UMD, New Brunswick, New Jersey, USA. November 2, 2000.

  30. University of Minnesota, Minneapolis, Minnesota, USA. November 27, 2000.

  31. Oncogenomics: Dissecting Cancer Through Genome Research, Nature Genetics, Tuscon, Arizona, USA. January 25-27, 2001.

  32. UAB, Birmingham, Alabama, USA. February 26, 2001.

  33. Bard College, New York, USA. April 18, 2001.

  34. Physics/Chemistry. CSUN, Northridge, California, USA. May 2, 2001.

  35. ACS Meeting, Chicago, Illinois, USA. August 26-30, 2001.

  36. University of Maryland, Maryland, USA. October 2, 2001.

  37. Columbia University, New York, New York, USA. October 15, 2001.

  38. Mast Cell Workshop, Bethesda, Maryland, USA. November 26-30, 2001.

  39. Genomics Seminar Series, Skirball Institute, New York, New York, USA. February 6, 2002.

  40. Mining the Human Genome for New Drug Discovery – New Ways of Handling Orphan Targets. NYAS, New York, New York, USA. February 26, 2002.

  41. Biological Processes for New and Innovative Engineering Systems and Applications, ARO workshop, Research Triangle Park, North Carolina, USA. February 26-27, 2002.

  42. New York City Blood Centre, New York, New York, USA. March 7, 2002.

  43. Proteomics – The New Frontiers: Discovery, Separation, Prediction & Modeling, University of Delaware, Newark, Delaware, USA. March 14-15, 2002.

  44. Harvard University, Cambridge, Massachusetts, USA, March 28, 2002.

  45. Molecular Cell Biology and Biochemistry Seminar Series, Virginia Tech, Blacksburg, Virginia, USA. April 5, 2002.

  46. UCSF, San Francisco, California, USA, April 15, 2002.

  47. A Workshop on large biological structures, Asilomar, California, USA. April 20-22, 2002.

  48. SCBMB Program, Baylor College of Medicine, Houston, Texas, USA. May 15, 2002.

  49. 50th ASMS conference American Society of Mass Spectrometry, Orlando, Florida, USA. June 2-6, 2002.

  50. The 5th Summer Session of the New York Structural Biology Discussion Group , Cold Spring Harbor Laboratory, New York, USA. June 26, 2002

  51. Berkeley-Stanford summer school for protein crystallography, SSRL, Stanford, California, USA. July 8-12, 2002.

  52. Gordon Conference on Diffraction Methods in Structural Biology, Connecticut College, New London, Connecticut, USA. July 14-19, 2002.

  53. NYCBS New York Computational Biology Society seminar, NAS, New York, New York, USA. September 18, 2002.

  54. Center for Biological Modeling, Michigan State University, East Lansing, Michigan, USA. September 27, 2002.

  55. Bioinformatics seminar, Texas A&M University, Tamu, TX, USA. November 7, 2002.

  56. Structure and Function of the Proteome, Argonne National Laboratory, Argonne, Illinois, USA. November 23-24, 2002.

  57. Keystone Symposium in Proteomics: Technologies and Applications, Keystone Resort in Keystone, Colorado, USA. March 25-30, 2003.

  58. NCRR sponsored Workshop on Structural Proteomics of Complexes, Bethesda, Maryland, USA. April 7-8, 2003.

  59. American Society for Biochemistry and Molecular Biology meeting, San Diego, California, USA. April 11-15, 2003.

  60. St. Jude Children’s Research Hospital, Memphis, TN, USA. April 22, 2003.

  61. Genentech, Inc., South San Francisco, CA, USA. April 29, 2003.

  62. Structure and Function of Proteome, SBC, Argonne National Laboratory, Argonne, Illinois, USA. Spring, 2003.

  63. ”Frontiers of Bioinformatics” symposium, Center of Excellence in Bioinformatics, University at Buffalo, Buffalo, New York, USA. June 6-8, 2003.

  64. IBM Thomas J. Watson Research Center, New York, New York, USA. June 11, 2003.

  65. 2003 Gordon Research Conference on 3D Electron Microscopy of Macromolecules, Colby Sawyer College, New London, New Hampshire, USA. June 22-26, 2003.

  66. PSI workshop ond data management, NIH Campus, Bethesda, MD, USA. July 10-11, 2003.

  67. GTL and Beyond: Data and Computational Needs Workshop, San Francisco, CA, USA. September 10-11, 2003.

  68. 2003 Pharmaceutical Sciences and Pharmacogenomics Retreat, Marshall, CA, USA. September 11-13, 2003.

  69. Structure and Chemistry Seminar at Scripps, San Diego, CA, USA. September 18, 2003.

  70. Seminar at Northeastern University, Boston, MA, USA. October 6, 2003

  71. Workshop on Visualization of Biological Complexes, Four Points Sheraton Hotel, Emeryville, San Francisco Bay Bridge, CA, USA. October 11-12, 2003

  72. Seminar at PARC, Palo Alto, CA, USA. October 15, 2003.

  73. NIGMS Homology Modeling Workshop, Bethesda, MD, USA. October 21-22, 2003.

  74. Seminar at Purdue University, West Lafayette, IN, USA. October 24-25, 2003.

  75. PSI Target Selection Workshop, Bethesda, MD, USA. November 13-14, 2003.

  76. Biophysics/CCB Retreat, Asilomar Conference Center, Pacific Grove, CA, USA. December 7-9, 2003.

  77. Licensing Executives Society meeting, San Francisco, CA, USA. February 12, 2004.

  78. The Structural, Functional and Evolutionary Gordon Conference, Four Points Sheraton Harbortown, Ventura, CA, USA. February 15-20, 2004.

  79. Seminar at Berkeley, Berkeley, CA, USA. March 8, 2004.

  80. Seminar at UCSC, Santa Cruz, CA, USA. March 11, 2004.

  81. Workshop on Structure Determination of Macromolecular Machines and Assemblies by Hybrid Methods, Granlibakken/Lake Tahoe Conference Center, CA, USA. March 17-20, 2004.

  82. Workshop on Structural Determination of Environmentally Responsive Gene (ERG) Products for Diagnostics & Drug Discovery (NIEHS/DERT), Snowbird Resort, Snowbird, Utah, USA April 12-13, 2004.

  83. 2004 Keystone Symposium on Structural Genomics, Snowbird Resort, Snowbird, Utah, USA April 13-19, 2004.

  84. BayGenomics PGA, San Francisco, CA, USA. April 27, 2004.

  85. Gladstone Scientific Retreat, Asilomar in Monterey County, CA, USA. May 18-20. 2004.

  86. Seminar at Caltech, Pasadena, CA, USA. October 12, 2004.

  87. ICSG 2004 Meeting, Washington, DC, USA. November 17-24, 2004.

  88. Workshop of the Center of Protein Folding Machinery, Stanford University, CA, USA. December 4-5, 2004.

  89. Biological and Medical Informatics/Biophysics/Chemistry and Chemical Biology graduate groups retreat, Asilomar Conference Center, Pacific Grove, CA, USA. December 5-7, 2004.

  90. ABRF meeting, Biomolecular Technologies:Discovery to Hypothesis, Savanah, Georgia, USA. February 5-8, 2005.

  91. Frontiers in Computational Biophysics Symposium, NIH campus in Bethesda, MD, USA. April 29-30, 2005.

  92. NIH Symposium on Structural Analysis of Large Assemblies: Sizing up the Challenges, NIH campus in Bethesda, MD, USA. June 2-3, 2005.

  93. SRI’s Computational Biology series, SRI International, Menlo Park, CA, USA. June 29, 2005.

  94. 19th Annual Symposium of the Protein Society, Boston, MA, USA. July 30 – August 3, 2005.

  95. GRC 2005 Computer-aided design meeting, Tilton School, NH, USA. July 31 – August 5, 2005.

  96. Seminar at the Biochemical and Biophysical Methods Course Fall 2005, The Rockefeller University, New York, NY, USA. October 11, 2005.

  97. Seminar at the Novartis Institutes for BioMedical Research, Cambridge, MA, USA. November 9, 2005.

  98. Workshop on Biological Macromolecular Structure Models, The State University of New Jersey, Piscataway, NJ, USA. November 19-20, 2005.

  99. Organizer and Speaker of the Theme “Macromolecular Structure and Dynamics” with 4 Symposia. ASBMB 2006 meeting, San Francisco, CA, USA. April 1-5, 2006.

  100. Seminar at UC Davis, CA. June 1, 2006.

  101. Symposium at Wyeth Research, Cambridge, MA, USA. October 16, 2006.

  102. Seminar at the University of Massachusetts, Dept. of Biochemistry and Molecular Pharmacology, Worcester, MA, USA. October 18, 2006.

  103. Seminar at the Fifth Annual Systems Biology Course at the Institute for Systems Biology, Seattle, WA, USA. 9 November 2006.

  104. Seminar at UC Merced Center for Computational Biology, Merced, CA, USA. 30 November 2006.

  105. TDR/WHO Drug Target Selection Meeting in Seattle, OR, USA. 1 December, 2006.

  106. Biological and Medical Informatics/Biophysics/Chemistry and Chemical Biology Graduate Groups Retreat, Monterey, CA, USA. 3-5 December, 2006.

  107. Collaborative Drug Discovery meeting, UCSF, San Francisco, USA. 1 March 2007

  108. The Protein Folding Center Annual Retreat, Stanford, CA, USA. 27-29 May 2007.

  109. Seminar at the Center for Theoretical Biological Physics. UCSD,San Diego USA. 1 June, 2007.

  110. Institute for Systems Biology, Seattle, WA, 12 July 2007.

  111. Seminar at Genentech, San Francisco, CA, 25 September 2007.

  112. Seminar at the SCRIPPS Institute, La Jolla, CA, USA. September 27-28

  113. Speaker and Organizer of the Modeling of Protein Interactions Meeting, MPI-2007, Lawrence, KA, USA, September 30 – October 2, 2007.

  114. Seminar at the Albert Einstein College of Medicine, New-York, NY. 16 October 2007.

  115. Seminar at University of California Berkeley, New-York, NY. 25 October 2007.

  116. Seminar at the Carolina Center for Genomic Sciences colloquium, UNC, Chapel Hill, NC, USA. 9 November 2007.

  117. Seminar at the Duke University Computational Biology Series, Durham, NC, USA. 12 November 2007.

  118. Keystone Symposium on Structural Genomics and Its Applications to Chemistry, Biology and Medicine, Steamboat Springs, Colorado, CO, USA, 6-11 January 2008.

  119. Seminar for the Biochemical and Biophysical Methods Course at the Rockefeller University, New York, NY. 30 January 2008.

  120. Seminar at the University of Utah, February 25 2008.

  121. Seminar at The Buck Institute for Age Research, Novato, CA, USA, July 1 2008.

  122. Speaker and Organizer of the Protein Modeling Workshop, University of California, San Francisco, CA, USA, July 11-12 2008.

  123. Speaker at the 2008 Senior Vice Chancellor’s Laureate Lecture Series at the University of Pittsburgh, July 18 2008.

  124. Protein Structure Initiative (PSI3), Washington DC, USA, October 29-30, 2008.

  125. Seminar at UT Southwestern Medical Center, 5-6 Nov 2008.

  126. Biology and Mathematics in the Bay Area (BaMBA), University of California, Davis, CA,USA, November 15, 2008.

  127. Biological and Medical Informatics/Biophysics/Chemistry and Chemical Biology Graduate Groups Retreat, Monterey, CA, USA. 7-9 December, 2008.

  128. NCMI Single Particle Reconstruction Workshop, Baylor College of Medicine, Houston, TX, USA, December 10-13, 2008.

  129. Seminar at the University of Pennsylvania School of Medicine, Philadelphia, PA, USA, January 29, 2009.

  130. Mesilla Chemistry Workshop Multi-Scale Modeling of Biological Molecules, Mesilla, TX, USA, February 1-4, 2009.

  131. Technology Centers for Networks and Pathways Annual All Hands Meeting, Washington DC, USA, March 12-13, 2009

  132. 2009 Symposium on Molecular Systems Biology of the Cell, Seattle, WA, USA, April 19, 2009.

  133. Seminar at the University of Minnesota, Minneapolis, MN, USA, April 22, 2009.

  134. Seminar at the University of Washington, Seattle, WA, USA, May 14, 2009.

  135. Seminar at Indiana University, Indianapolis, IN, USA, May 18, 2009.

  136. Seminar at University of Texas Southwestern, Dallas, TX, USA, May 20-21, 2009.

  137. 23rd Annual Symposium of the Protein Society, Boston, MA, USA, July 25-29, 2009.

  138. Speaker at the Pharmaceutical Sciences and Pharmacogenomics Retreat, Tomales Bay, CA, USA, September 9-10, 2009.

  139. Beckman Institute 20th Anniversary Symposium, University of Illinois at Urbana-Champaign, Urbana, IL, USA, September 20-23, 2009.

  140. Seminar at University of Southern California, Los Angeles, CA, USA, November 19, 2009.

  141. Speaker at the Annual Computational and Theoretical Biology Symposium, Houston, TX, USA, December 4-6, 2009.

  142. Speaker and Co-Organizer of the Keystone Symposia on Structural Biology/Structural Genomics, Steamboat Springs, CO, USA, January 8-13, 2010.

  143. Speaker at the Modeling of Cryo-EM Map Workshop, Baylor College of Medicine, Houston, TX, USA, January 14-17, 2010.

  144. Chair and Speaker at the Biophysical Society 54th Annual Meeting, San Francisco, CA, USA, February 20-24, 2010.

  145. Speaker at the Hybrid Methods Symposium, Lake Tahoe, CA, USA, March 10-14, 2010.

  146. Speaker at the Structural Biology Symposium, Case Western Reserve University, Cleveland, OH, USA, May 19, 2010.

  147. Keynote Speaker at the 3Dsig Satellite Meeting, Boston, MA, USA, July 9-10, 2010.

  148. Speaker at the 18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA, July 11-13, 2010.

  149. Seminar at Vanderbilt University, Nashville, TN, USA, October 12, 2010.

  150. Seminar at Ohio State University, Columbus, OH, USA, October 26, 2010.

  151. Speaker at the MPI Meeting, University of Kansas, Lawrence, KS, USA, October 28-30, 2010.

  152. Seminar at the University of California, San Diego, CA, USA, December 12, 2010.

  153. Speaker at the Design of Drugs and Chemicals that Influence Biology Workshop, University of California, Los Angeles, CA, USA, April 4-8, 2011.

  154. Keynote Speaker at the Sanford-Burnham Structural Systems Biology Symposium, La Jolla, CA, USA, June 7, 2011.

  155. Speaker at the Institute for Systems Biology Symposium and Workshop, University of Washington, Seattle, WA, USA, July 24-27, 2011.

  156. Speaker at the Accelerating Predictive Drug Development Through Quantitative Pharmacology Symposium University of California, San Francisco, California, USA, September 22-23, 2011.

  157. Speaker at the Worldwide Protein Data Bank (wwPDB) Symposium, Cold Spring Harbor, NY, USA, October 28-30, 2011.

  158. Seminar at St. Jude Children’s Research Hospital, Memphis, TN, USA, November 15, 2011.

  159. Seminar at Duke University, Durham, NC, USA, November 18, 2011.

  160. Speaker and Co-organizer of the Keystone Symposia on High Throughput and Hybrid Approaches to Structural Biology, Keystone, CO, USA, January 22-27, 2012.




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